CV
Work experience
- Senior Scientist, Maastro Clinic, 2019 - Present
- Postdoctoral Researcher, Maastro Clinic, 2017 - 2019
- Medical Software Developer, Maastro Clinic, 2016 - 2017
- PhD researcher
- Topic: Translational Research on Exhaled Volatile Organic Compounds from Bedside to Bench
- Location: Dept. of Pharmacology & Toxicology, Maastricht University
- Date: 2013 - 2017
- Google Summer of Code, Student programmer, 2012
Education
- PhD, Maastricht University, 2017
- MSc. Biomedical Sciences, Maastricht University, 2011 - 2013
- Internship. Imperial College, London, United Kingdom (8 months). Topic: Analysis of gene amplifications in breast cancer reveals SQLE as a predictor of poor outcome in estrogen receptor-positive disease
- Internship. Dept. of Toxicogenomics, Maastricht University (6 months). Topic: Identifying non-genotoxic effects of carcinogens using bioinformatics
- BSc. Biomedical Sciences, Maastricht University, 2008 - 2011
- Internship. Dept. of Bioinformatics (2.5 months). Topic: Pathway modulation at the mRNA level in Crohn’s disease and ulcerative colitis.
Committees and workgroups
- Open Science Community Maastricht (OSCM), Founder & representative, 2019 - present
- ICT&Health, Editorial Board Member, 2019 - present
- Female Empowerment Maastricht (FEM)
- Board member, 2019 - present
- Ambassador, 2019
- Workgroup Implementation Shared Decision Making in Oncology at Maastro (WISDOM), Chair/Leader, 2018 - present
- NUTRIM PhD student council, Chair, 2014 - 2016
- FHML Interfaculty PhD council, NUTRIM PhD student representative, 2014 - 2016
- Maastricht University Kidz College program, Organizer, 2014 - 2015
Research grants
Publications
- Learning from scanners: Bias reduction and feature correction in radiomics Zhovannik, Ivan et al. Clinical and Translational Radiation Oncology. 2019. DOI: http://doi.org/10.1016/j.ctro.2019.07.003
- Distributed radiomics as a signature validation study using the Personal Health Train infrastructure Shi, Zhenwei et al. Scientific Data. 2019. DOI: http://doi.org/10.1038/s41597-019-0241-0
- Data Sharing and Toxicity Modelling : A Vision of the Near Future Shi, Zhenwei et al. Modelling Radiotherapy Side Effects. 2019. DOI: http://doi.org/10.1201/b21956-15
- Development and validation of a patient decision aid for prostate Cancer therapy: from paternalistic towards participative shared decision making Ankolekar, Anshu et al. BMC medical informatics and decision making. 2019. DOI: http://doi.org/10.1186/s12911-019-0862-4
- The Benefits and Challenges of Using Patient Decision Aids to Support Shared Decision Making in Health Care Ankolekar, Anshu et al. JCO clinical cancer informatics. 2018. DOI: http://doi.org/10.1200/CCI.18.00013
- Radiation Oncology Terminology Linker: A Step Towards a Linked Data Knowledge Base Lustberg, Tim et al. Studies in Health Technology and Informatics. 2018. DOI: http://doi.org/10.3233/978-1-61499-852-5-855
- Exposure to genotoxic compounds alters in vitro cellular VOC excretion Fijten, R. R. R. et al. Journal of Breath Research. 2018. DOI: http://doi.org/10.1088/1752-7163/aa9080
- The necessity of external validation in exhaled breath research: a case study of sarcoidosis Fijten, Rianne R. R. et al. Journal of Breath Research. 2017. DOI: http://doi.org/10.1088/1752-7163/aa8409
- Altered gene expression profiles in the lungs of benzo[a]pyrene-exposed mice in the presence of lipopolysaccharide-induced pulmonary inflammation Shi, Q. et al. Toxicology and Applied Pharmacology. 2017. DOI: http://doi.org/10.1016/j.taap.2017.09.023
- Analysis of volatile organic compounds in exhaled breath to diagnose ventilator-associated pneumonia Schnabel, Ronny et al. Scientific Reports. 2015. DOI: http://doi.org/10.1038/srep17179
- Identification of microorganisms based on headspace analysis of volatile organic compounds by gas chromatography-mass spectrometry Boots, A. W. et al. Journal of Breath Research. 2014. DOI: http://doi.org/10.1088/1752-7155/8/2/027106
- Current breathomics–a review on data pre-processing techniques and machine learning in metabolomics breath analysis Smolinska, A. et al. Journal of Breath Research. 2014. DOI: http://doi.org/10.1088/1752-7155/8/2/027105
- Pathways for ligand activated nuclear receptors to unravel the genomic responses induced by hepatotoxicants Fijten, R. R. R. et al. Current Drug Metabolism. 2013. DOI: http://doi.org/10.2174/1389200214666131118234138
Talks
The Why behind FAIR data and PHT
Invited talk at HealthRI 2020, Utrecht, the Netherlands
Responsible AI for clinical shared decision making
Organized workshop at Digital Society conference 2019, the Netherlands
Debate
Invited talk at GROW science day 2019, Maastricht, the Netherlands
Panel discussion: Technology in healthcare
Invited talk at NefeMed innovatielab 2019, the Netherlands
The Personal Health Train
Invited talk at VvE Symposium BIG DATA, Utrecht, the Netherlands
Workshop: From data to personalised medicine
Invited talk at BMosa conference, Maastricht, the Netherlands
The solution to overcoming the implementation barrier of Clinical Decision Support Systems: EHR-compatible, intuitive interfaces
Conference poster at ICCR 2019, Montreal, Canada
Reproducibility in data science
Invited talk at Annual NvT meeting 2019, Ede, the Netherlands
ProTRAIT: Protonentherapie onderzoeksinfrastructuur
Invited talk at KWF visit at Maastro, Maastricht, the Netherlands
De potentie en implementatie van Big Data in onderzoek en kliniek
Invited talk at CTCM conference 2019, Roermond, the Netherlands
Pitch: workshop consortia building
Invited talks at Digital Society conference 2918, the Netherlands
Biological origin of Volatile Organic Compounds
Invited talk at Breath biopsy conference 2018, Cambridge, UK
Big Data in Precision Medicine
Invited talk at Benelux Precision Medicine, Utrecht, the Netherlands
The solution to overcoming the implementation barrier of Clinical Decision Support Systems: EHR-compatible, intuitive interfaces
Conference poster at ESTRO 2019, Barcelona, Spain
It’s a matter of perspective
Conference presentation selected by abstract at Annual NvT meeting 2017, the Netherlands
Exhaled breath: non-invasive diagnosis of ventilator-associated pneumonia
Conference presentation selected by abstract at European Respiratory Society 2015, Amsterdam, the Netherlands
Analysis of exhaled breath in lung diseases
Invited talk at Imperial College, London, UK
Volatile Biomarkers of Cisplatin Toxicity: Monitoring chemotherapy resistance
Conference presentation selected by abstract at Annual NvT meeting, the Netherlands